rs29373678 SNP Detail

Summary

• ID
  rs29373678
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127346421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGAAGGAGG GATGCTGGGG GTCCCAGGAT TAGAGGACAC
  TGTCTTGATT GAACCCTGTG ATCACACCTC CCCCTCAATA TCCTGCCAGT TGAGTTAGGC
  Y
  CTGACCAGTC CCAAGAGAGG GCAGGAGGTA TGACAGGGAC ACTGTTTGTC CCCAGTGCCT
  CCCACTCCCA CAAGCCAGCT GCCTGGTGAT GGATGATGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38637724	mCV22968924	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					C		T
ss61334359	NES16949421	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C	T	C	T	C	C	T	C	C
ss147732733	ENSMUSSNP353318	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29373678					SNP	C	C	C	C	C	C	C	C	C	T	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61334359	NES16949421	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127346421 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2360	CpG island 2360	956 bp distal
Cpgi2361	CpG island 2361	989 bp proximal
Rr402328	regulatory region 402328	1887 bp downstream
Rr402329	regulatory region 402329	1221 bp downstream
Rr440928	regulatory region 440928	1403 bp distal
Rr440929	regulatory region 440929	791 bp distal
Rr440930	regulatory region 440930	1374 bp proximal
Rr440931	regulatory region 440931	1537 bp proximal
Rr440932	regulatory region 440932	1732 bp proximal
Stac3	SH3 and cysteine rich domain 3	1729 bp downstream