rs29373819 SNP Detail

Summary

• ID
  rs29373819
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:90918010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACTT GCAAAGAGCC TGCCCAGAGG
  R
  GCTTGGGGAG GTGAGACCGA GGCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss38637349	mCV24611876	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss147290229	ENSMUSSNP1301640	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss323387274	CHEV_10_90544893	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs29373819					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:90918010 () rs orientation: forward

Symbol	Name	Function Class
Apaf1	apoptotic peptidase activating factor 1	within coordinates
Cpgi2099	CpG island 2099	35 bp proximal
Ikbip	IKBKB interacting protein	792 bp upstream
Rr402144	regulatory region 402144	706 bp upstream
Rr436976	regulatory region 436976	within coordinates
Rr436977	regulatory region 436977	271 bp proximal
Tssr95222	transcription start site region 95222	45 bp downstream
Tssr95223	transcription start site region 95223	876 bp upstream
Tssr95224	transcription start site region 95224	888 bp upstream
Tssr95225	transcription start site region 95225	933 bp upstream
Tssr98900	transcription start site region 98900	408 bp downstream
Tssr98901	transcription start site region 98901	505 bp downstream
Tssr98902	transcription start site region 98902	535 bp downstream
Tssr98903	transcription start site region 98903	556 bp downstream
Tssr98904	transcription start site region 98904	635 bp downstream