rs29373979 SNP Detail

Summary

• ID
  rs29373979
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:4217672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTTACCT TTGTGTCTTG
  CTCTCATTAT TGTATTTTAC TTCTGTTCCT TTTGTTTTGT TATTGTTTAG GGTTGTTAAT
  TAATTAATTT GCTTACTTGT TTTAAGACTG GGTCTCACTC TGTAGCCCAG GGCTGGTTTG
  GAACTCACTA GCTAGCCCAA CTAGTGGCAG TCCTCCTGCC TCAGCCTCTC AAATGATTTC
  R
  TAGCCACGCC CGGATGGCAA CATTGCCTGT TGGCTGTTTT CCAGCACGTG TTTGTGAGCA
  AGAGTTCGCT CGGGTGGATT TAAGATAGTT TTACAGAAAC GTGTTGAACA ACCAAACAAC
  TTAAAGGAAA AACCAACCAA TTTCAGAATT TGGTGATAGA GAGCAGCGAG GACCTTTAGA
  AATGGGTCAG GAAGTGGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38635175	mCV25201855	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss146743540	ENSMUSSNP6349704	ENSEMBL	ENSEMBL_Sanger	r	SNP	C		T
ss323240833	CHEV_10_6078869	CHEVERUD	SCREENING_POP	r	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29373979					SNP	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:4217672 () rs orientation: forward

Symbol	Name	Function Class
Akap12	A kinase anchor protein 12	within coordinates
Cpgi1267	CpG island 1267	530 bp distal
Cpgi1268	CpG island 1268	1843 bp distal
Gm67397	predicted gene, 67397	within coordinates
Gm67407	predicted gene, 67407	1599 bp downstream
Rr384063	regulatory region 384063	1107 bp downstream
Rr384064	regulatory region 384064	1439 bp upstream
Rr426944	regulatory region 426944	1282 bp distal
Rr426945	regulatory region 426945	376 bp distal
Tssr3113	transcription start site region 3113	1537 bp downstream
Tssr3114	transcription start site region 3114	1141 bp downstream
Tssr92240	transcription start site region 92240	1331 bp downstream
Tssr92241	transcription start site region 92241	1298 bp downstream
Tssr92242	transcription start site region 92242	803 bp upstream