rs29374676 SNP Detail

Summary

• ID
  rs29374676
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13838856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATTT GCTTAGATCA GTGGTACACC
  W
  TTCCAAGAGA AGCTGAAACA GCAGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38640232	mCV23172020	ABI	CRAMUS_MOUSE	f	SNP	A	A	T
ss146837560	ENSMUSSNP5425962	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss323255218	CHEV_10_13682918	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29374676					SNP	A	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13838856 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1318	CpG island 1318	1431 bp proximal
Gm56954	predicted gene, 56954	956 bp downstream
Gm66890	predicted gene, 66890	1508 bp upstream
Rr384171	regulatory region 384171	952 bp upstream
Rr427854	regulatory region 427854	1018 bp proximal
Rr427855	regulatory region 427855	1519 bp proximal
Tssr92402	transcription start site region 92402	1514 bp upstream
Tssr92403	transcription start site region 92403	1684 bp upstream
Tssr92404	transcription start site region 92404	1715 bp upstream
Tssr92405	transcription start site region 92405	1737 bp upstream
Tssr92406	transcription start site region 92406	1902 bp upstream