rs29375467 SNP Detail

Summary

• ID
  rs29375467
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:122529379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCTCCTG CCACCTCCCC
  ATGCTCTTAT TAATGGGTGG AAGCTGCTGA GGGCCAGGCT GCTCCGTTGC TAGAACCAGG
  TGCCCAGAGC AAGCGCGGCT GGTAATTCAG AGCGGCCACG AATAGGAGAA GAGTAGATTT
  GGCAAGCCGG ACTGTGGCAG CTGCTGTGTA CTTACTTATG GTTTTAAATA GTGCTCACAG
  S
  GGGGTTTCAC GGGCCATACT TGAAGCCCTG TCTCTGCCCC TCCTGCCTCA AGGCATGAGG
  TGAATACTGG CTCAGGCCAC CTGGGCTGTG ACAGTCCTTT TGTACCTTGT GCCCTCCTGA
  AGCCTGCCTT GCTCCTTGCA TCCCACTATG GCTTCCCATC CTGGGGGCCT CTAAGTCCTG
  AGTGCTACCT TCTCATCCAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38639519	mCV23854520	ABI	CRAMUS_MOUSE	f	SNP	C						G
ss52249009	NES15337118	PERLEGEN	MM_PANEL2	f	SNP	C	G	G	G	C	G		G	G	G	G	G	G	G	C
ss147651293	ENSMUSSNP1839876	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29375467					SNP	C	G	G	G	C	G	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52249009	NES15337118	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:122529379 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2304	CpG island 2304	16 bp proximal
Ppm1h	protein phosphatase 1H (PP2C domain containing)	within coordinates
Rr213323	regulatory region 213323	1622 bp proximal
Rr226290	regulatory region 226290	within coordinates