rs29375542 SNP Detail

Summary

• ID
  rs29375542
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:85892662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCCCTCTCC CCTTCTCCTC TGAGAGGGTG ACCCCTCCCC
  CCGCCCCCAA TATCAAGTCT CTGCCAGATT AGGCACGTCC TCTCCCACTG AGGCCAGCCA
  R
  GGCAGCCAAG AAGCCTGAGC TGCCTGACTG CTATGTATGT GTGGGGGGAG TGGGGAGGGG
  AGGTGGCAAG GGATTCGTCC CAGCCCGTGT TTGTTCTTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss38644837	mCV27559961	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss147216531	ENSMUSSNP4544727	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss323373261	CHEV_10_85519543	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29375542					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:85892662 () rs orientation: forward

Symbol	Name	Function Class
Rr217171	regulatory region 217171	62 bp distal
Rr223758	regulatory region 223758	453 bp proximal
Syn3	synapsin III	within coordinates
Tssr98759	transcription start site region 98759	820 bp downstream
Tssr98760	transcription start site region 98760	837 bp downstream