rs29375908 SNP Detail

Summary

• ID
  rs29375908
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13840118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTT TCTCCAACTC ATTAAAGAGG
  Y
  GGCCCTTCCT TTTTAATATA TTCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss38646374	mCV23172008	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss323255221	CHEV_10_13684180	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29375908					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13840118 () rs orientation: forward

Symbol	Name	Function Class
2900084C01Rik	RIKEN cDNA 2900084C01 gene	1400 bp upstream
Cpgi1318	CpG island 1318	169 bp proximal
Gm56954	predicted gene, 56954	within coordinates
Gm66890	predicted gene, 66890	246 bp upstream
Hivep2	human immunodeficiency virus type I enhancer binding protein 2	1701 bp upstream
Rr384171	regulatory region 384171	within coordinates
Rr427854	regulatory region 427854	within coordinates
Rr427855	regulatory region 427855	257 bp proximal
Rr427856	regulatory region 427856	1358 bp proximal
Rr427857	regulatory region 427857	1893 bp proximal
Tssr3141	transcription start site region 3141	1737 bp upstream
Tssr92402	transcription start site region 92402	252 bp upstream
Tssr92403	transcription start site region 92403	422 bp upstream
Tssr92404	transcription start site region 92404	453 bp upstream
Tssr92405	transcription start site region 92405	475 bp upstream
Tssr92406	transcription start site region 92406	640 bp upstream
Tssr92407	transcription start site region 92407	865 bp upstream
Tssr92408	transcription start site region 92408	884 bp upstream
Tssr92409	transcription start site region 92409	916 bp upstream
Tssr92410	transcription start site region 92410	954 bp upstream
Tssr92411	transcription start site region 92411	1405 bp upstream
Tssr92412	transcription start site region 92412	1477 bp upstream
Tssr92413	transcription start site region 92413	1509 bp upstream
Tssr92414	transcription start site region 92414	1719 bp upstream
Tssr92415	transcription start site region 92415	1800 bp upstream
Tssr92416	transcription start site region 92416	1832 bp upstream
Tssr92417	transcription start site region 92417	1865 bp upstream
Tssr92418	transcription start site region 92418	1894 bp upstream
Tssr96784	transcription start site region 96784	1270 bp downstream
Tssr96785	transcription start site region 96785	1288 bp downstream