rs29375945 SNP Detail

Summary

• ID
  rs29375945
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:3666019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATTCAGCT CATGCAAAAA
  GAGGGGTGCT GCTGGTTGCT GTAGCTGTAC TGACAGTTGG CCAGCTGCTA TGCTGGCTTC
  GTTCCTGCAT ATCCAATGCC AGTCATCTTT TGCCTTCACC TCCAGCTCAC CTTCTCTGGT
  TCTAAAGCCC TCTACCTTCA CTTCCTCCAA TGTAAGGCAG TATAACTAGG AACCAGACAT
  R
  AATTCTATAA CAACAGAGTT CACAAAGGGA GCCAGATGAC CCTTATACTC CAACTTTCCC
  ATCTGCAGAA TGGGTAAGAG ACTATGCTTA ACTCGTCACT GAGGATCCCC TTAAAATCAC
  TGGGATACAG GTGCTGCTGA TGATACAAGT GTTAGTGCCC TGCACCCTCC CAGTCTGCTC
  AGTTCATATT GTCCTTGTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38644440	mCV25387228	ABI	CRAMUS_MOUSE	f	SNP		G	G					A		A
ss52125755	NES15247277	PERLEGEN	MM_PANEL2	r	SNP	C		C	C	C	C	T		C	T	T		T	T		C
ss146748701	ENSMUSSNP4902437	ENSEMBL	ENSEMBL_Sanger	r	SNP		C	C							T
ss323242502	CHEV_10_6630522	CHEVERUD	SCREENING_POP	r	SNP												C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29375945					SNP	G	G	G	G	G	G	A	A	G	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52125755	NES15247277	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:3666019 () rs orientation: forward

Symbol	Name	Function Class
Gm56946	predicted gene, 56946	1696 bp upstream
Rr426848	regulatory region 426848	1801 bp proximal