rs29376200 SNP Detail

Summary

• ID
  rs29376200
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:90260504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCA CACTGGCTTC CTTCCCATTC
  Y
  CTGGAATCCT TTCAACCTTG AGATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38640918	mCV23619443	ABI	CRAMUS_MOUSE	f	SNP	C	T	T		C
ss47941499	NES12018925	PERLEGEN	MM_PANEL2	f	SNP				T		T	C	T		T	T		T
ss147281979	ENSMUSSNP4412723	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss323385600	CHEV_10_89887387	CHEVERUD	SCREENING_POP	f	SNP									T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29376200					SNP	C	T	T	T	C	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47941499	NES12018925	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:90260504 () rs orientation: forward

Symbol	Name	Function Class
Anks1b	ankyrin repeat and sterile alpha motif domain containing 1B	within coordinates
C230047L17Rik	RIKEN cDNA C230047L17 gene	1946 bp upstream