rs29376325 SNP Detail

Summary

• ID
  rs29376325
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:44232419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCAATTT AAATGCTGGC
  CCTCTGTGAG CAAAGATCTA CTATAATCCT TGTTAAGGTT CAGCCCAAAC TTGGTAATTA
  TAGTTTACTA AATTTATCAC GCGCTGTAAA TATAAATGAG TCTTGAATGC TTTCCTCTCT
  GTCTGTCCTC ATGCTTTGTC CAGCACACAG GCACTTCTGA CTGGTCTTGC TGATACAGAC
  Y
  CTCTTCAGAT CTACATCCAT TGGTGTATGT CTTTTCTAAA ATCAAAGGAC GAAAATGATT
  ATTTTCTTTC TCTACTAATG GAGATGATAT GATACTGGAT CCAACAAAAG ATGCCTCTGA
  TTTCCTTTCC ATCATTTTTT TTTTATCTTA ATCTCAAGAA GCTAAATAAG TTAACCTGGA
  TTTTCGAAAA GTGGAAAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38646208	mCV23013869	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		T
ss52251192	NES15310178	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		T	T	T	C	T	T	T	C
ss147093265	ENSMUSSNP5149714	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29376325					SNP	C	C	T	T	T	C	T	T	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52251192	NES15310178	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:44232419 () rs orientation: forward

Symbol	Name	Function Class
Atg5	autophagy related 5	within coordinates
Rr227723	regulatory region 227723	1020 bp distal
Rr227725	regulatory region 227725	583 bp proximal
Tssr93169	transcription start site region 93169	1969 bp upstream