rs29376516 SNP Detail

Summary

• ID
  rs29376516
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:115668689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTTAGCACC GACTGCTCTT CCGAAGGCCC TGAGTTCAAA
  TCCCAGCAAC CACATGGTGG CTCACAACCA TCTGTAATGA TAACTGAATC TCTTCTGGAG
  Y
  GTCTGAAGAC AGCTACAGTG TACTTACATA TAATAAATAA ATAAATCTAA AAAAAAAGGG
  ACTAAAAGCA TCTTTTCTTC TAAACTGTTA GAAACAACT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss38641561	mCV22877355	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss147580977	ENSMUSSNP1945171	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29376516					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115668689 () rs orientation: forward

Symbol	Name	Function Class
Rr385334	regulatory region 385334	476 bp upstream
Rr439263	regulatory region 439263	1022 bp proximal
Tspan8	tetraspanin 8	Intron
Tssr95839	transcription start site region 95839	255 bp upstream