rs29376562 SNP Detail

Summary

• ID
  rs29376562
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13842399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TCTTGGGTAC TGGGTGCAGC CCTGGGGTGC GTGGAGGGCG CACCGGCCGC
  Y
  GGCAGAGCAG AGCGGCGGGA ATCTAGGTCC CTTCTCGGCT CGGTAAGTGG           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss38644881	mCV23171714	ABI	CRAMUS_MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs29376562					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13842399 () rs orientation: forward

Symbol	Name	Function Class
2900084C01Rik	RIKEN cDNA 2900084C01 gene	680 bp downstream
Cpgi1318	CpG island 1318	within coordinates
Gm56954	predicted gene, 56954	913 bp upstream
Gm66890	predicted gene, 66890	998 bp downstream
Hivep2	human immunodeficiency virus type I enhancer binding protein 2	within coordinates
Rr368929	regulatory region 368929	1456 bp upstream
Rr384171	regulatory region 384171	1198 bp downstream
Rr427855	regulatory region 427855	924 bp distal
Rr427856	regulatory region 427856	266 bp distal
Rr427857	regulatory region 427857	367 bp distal
Rr427858	regulatory region 427858	within coordinates
Tssr3141	transcription start site region 3141	541 bp downstream
Tssr92403	transcription start site region 92403	1841 bp downstream
Tssr92404	transcription start site region 92404	1808 bp downstream
Tssr92405	transcription start site region 92405	1780 bp downstream
Tssr92406	transcription start site region 92406	1612 bp downstream
Tssr92407	transcription start site region 92407	1407 bp downstream
Tssr92408	transcription start site region 92408	1376 bp downstream
Tssr92409	transcription start site region 92409	1343 bp downstream
Tssr92410	transcription start site region 92410	1316 bp downstream
Tssr92411	transcription start site region 92411	816 bp downstream
Tssr92412	transcription start site region 92412	784 bp downstream
Tssr92413	transcription start site region 92413	763 bp downstream
Tssr92414	transcription start site region 92414	545 bp downstream
Tssr92415	transcription start site region 92415	454 bp downstream
Tssr92416	transcription start site region 92416	433 bp downstream
Tssr92417	transcription start site region 92417	411 bp downstream
Tssr92418	transcription start site region 92418	371 bp downstream
Tssr92419	transcription start site region 92419	322 bp upstream
Tssr92420	transcription start site region 92420	354 bp upstream
Tssr92421	transcription start site region 92421	479 bp upstream
Tssr92422	transcription start site region 92422	1166 bp upstream
Tssr96784	transcription start site region 96784	1005 bp upstream
Tssr96785	transcription start site region 96785	980 bp upstream
Tssr96786	transcription start site region 96786	95 bp downstream
Tssr96787	transcription start site region 96787	125 bp downstream
Tssr96788	transcription start site region 96788	166 bp downstream
Tssr96789	transcription start site region 96789	821 bp downstream
Tssr96790	transcription start site region 96790	978 bp downstream