rs29376888 SNP Detail

Summary

• ID
  rs29376888
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:44232907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTCACATG GTGCAGCTGC
  TCTGCCAGTC CCATGTACTG TCTGCCAACA ACAAGCTCAA AGCTACTTGG TCCCTTTATG
  CAGTCACAAC AGTAGTGTCT TGGGTGAGGA AAGGCTCCGC AGGTAAAGAT GCCTGGTGAT
  GTGAGTTCAG AACCCAAAGT GGAAAGAGAA GTCATTCTAC AGTTACCCTC TGCCTGCTAC
  R
  CATGTGCCGT GGCACATGCA CGTATGCACA TACAATGCAC AAACAGCAAT AACGTTTTTA
  AGGAAAATAT TTTGAACCCT CCAGTTTTTT AATTGTATCC ATTTTTTAGG TGAACAAGGC
  CATGTTTAAC TTTCACCTTT TTAAACTTGA TGGTCATGAG GCTCTTGATC AGTTTGTTTA
  AATCATCTAA CAGTCACTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38647190	mCV23013874	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss147093270	ENSMUSSNP371592	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29376888					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:44232907 () rs orientation: forward

Symbol	Name	Function Class
Atg5	autophagy related 5	within coordinates
Rr227723	regulatory region 227723	1508 bp distal
Rr227725	regulatory region 227725	95 bp proximal
Tssr93169	transcription start site region 93169	1481 bp upstream