rs29377498 SNP Detail

Summary

• ID
  rs29377498
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:121424066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGT GTTTGAATCT ACTTAAATCT
  R
  GATCCAGAGT CCTCGTTATA CAAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss38645493	mCV24849017	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss147637503	ENSMUSSNP4874545	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs29377498					SNP	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:121424066 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2289	CpG island 2289	841 bp distal
Rr402304	regulatory region 402304	1988 bp downstream
Rr402305	regulatory region 402305	1135 bp downstream
Rr440247	regulatory region 440247	1385 bp distal
Rr440248	regulatory region 440248	884 bp distal
Tbk1	TANK-binding kinase 1	1374 bp upstream
Tssr96043	transcription start site region 96043	1919 bp downstream
Tssr96044	transcription start site region 96044	1898 bp downstream
Tssr99626	transcription start site region 99626	1440 bp upstream
Tssr99627	transcription start site region 99627	1358 bp upstream
Tssr99628	transcription start site region 99628	1337 bp upstream
Tssr99629	transcription start site region 99629	1309 bp upstream
Tssr99630	transcription start site region 99630	1281 bp upstream
Xpot	exportin, tRNA (nuclear export receptor for tRNAs)	within coordinates