rs29377552 SNP Detail

Summary

• ID
  rs29377552
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:93870590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTA GCTTTTTAAA GTGCTATGAG
  Y
  GGACAATGGG TTCCAAATTA TGCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38643362	mCV23119841	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss147378591	ENSMUSSNP4495515	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss323407268	CHEV_10_93497473	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29377552					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:93870590 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2121	CpG island 2121	578 bp proximal
Fgd6	FYVE, RhoGEF and PH domain containing 6	1273 bp upstream
Gm49628	predicted gene, 49628	within coordinates
Rr402165	regulatory region 402165	987 bp upstream
Rr437370	regulatory region 437370	10 bp proximal
Rr437371	regulatory region 437371	967 bp proximal
Rr437372	regulatory region 437372	1233 bp proximal
Rr437373	regulatory region 437373	1284 bp proximal
Tssr3327	transcription start site region 3327	1636 bp upstream
Tssr95293	transcription start site region 95293	721 bp upstream
Tssr95294	transcription start site region 95294	1316 bp upstream
Tssr95295	transcription start site region 95295	1329 bp upstream
Tssr98985	transcription start site region 98985	1000 bp downstream
Tssr98986	transcription start site region 98986	1043 bp downstream
Tssr98987	transcription start site region 98987	1061 bp downstream
Tssr98988	transcription start site region 98988	1995 bp downstream
Vezt	vezatin, adherens junctions transmembrane protein	within coordinates