rs29378328 SNP Detail

Summary

• ID
  rs29378328
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:91906241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATA CCTGAAGTTT ATCTGAGGTA
  Y
  CATCTATCTT GAGTGGCCTA GCGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss38645167	mCV24971542	ABI	CRAMUS_MOUSE	f	SNP		T	T		C		T
ss50893809	NES14220737	PERLEGEN	MM_PANEL2	f	SNP	T			T		C		T		C	C		T
ss147299077	ENSMUSSNP2144961	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T				T
ss323389566	CHEV_10_91533124	CHEVERUD	SCREENING_POP	f	SNP									T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs29378328					SNP	T	T	T	T	C	C	T	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50893809	NES14220737	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:91906241 () rs orientation: forward

Symbol	Name	Function Class
D10Mit176	DNA segment, Chr 10, Massachusetts Institute of Technology 176	831 bp distal
Gm55043	predicted gene, 55043	1282 bp downstream
Mir135a-2	microRNA 135a-2	1707 bp downstream
Tssr98922	transcription start site region 98922	1719 bp downstream