rs29378364 SNP Detail

Summary

• ID
  rs29378364
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:93870814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTCCTAATTT CATTGAGAGC TGAAGATTTA CCTAGGGTAT CACTTGCTGG GTGTAGCTTT
  TTAAAGTGCT ATGAGCGGAC AATGGGTTCC AAATTATGCT TCCACGGGCA GTTTTTAGAT
  ATCTCAATAC TTCACATTCT GTACCGTACC TCACCCTCCC ATTACACACC ACGGGGGATT
  TCTTCTCTTT CTCTTGTATG AATTCCCTGA AATCTAGTTG GCTGAGGGAA AGTATGGCAT
  ACATATTCAA TACATACACA TACACATTCC AGGGTGTGGG TATTGACCTG TCTGATGGGG
  K
  AAAAAATGGC ACTAAAGCCA TTAACTAGGC TTTATTTTTT AAATTCAAGA TGGCAGAGAC
  ATCTTAAAAT AGTCCAACAC AAAAGCATTC ACATCCAGAC CAGAGCTTCC ATTCAGAACT
  GGCTACACTT AGCGCAACAG CAAGGACAAA AGAATGGAAC CTAGGTGCTG AGACGCCAGA
  GCTCACACCA TTGGCCACAG GTCTCACTTA ACAGACCTTA AACCTCACAT AGAAAGGCAC
  CTGCTGCCTG CCTGCATTCC AGAGGCCACA CCTTGATGAT GATGATTATG ATGATGATGA
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38648470	mCV23119832	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29378364					SNP	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:93870814 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2121	CpG island 2121	354 bp proximal
Fgd6	FYVE, RhoGEF and PH domain containing 6	1049 bp upstream
Gm49628	predicted gene, 49628	within coordinates
Rr402165	regulatory region 402165	763 bp upstream
Tssr3327	transcription start site region 3327	1412 bp upstream
Tssr95293	transcription start site region 95293	497 bp upstream
Tssr95294	transcription start site region 95294	1092 bp upstream
Tssr95295	transcription start site region 95295	1105 bp upstream
Tssr95296	transcription start site region 95296	1994 bp upstream
Tssr98985	transcription start site region 98985	776 bp downstream
Tssr98986	transcription start site region 98986	819 bp downstream
Tssr98987	transcription start site region 98987	837 bp downstream
Tssr98988	transcription start site region 98988	1771 bp downstream
Vezt	vezatin, adherens junctions transmembrane protein	within coordinates