rs29378524 SNP Detail

Summary

• ID
  rs29378524
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13429961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGAAGTTCA CCTTCATAAG AAATTAAAAT CTAGAAGACA
  GAAACATGTT TTCCACCCCA CGCCCCCAGA CAAATGGCAT AATGCATTCT TTTAATTTTT
  W
  AATTAACATC TTTTTTTTTT TTTTTTTTTT TTTTGGTCAT CTTTCTCAGA GCTCGGGGTG
  GGAAGAAGAG AGCCTTTGTT CATCAGTTGT CGAGTTGAG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38643601	mCV23067227	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	T	A
ss146822727	ENSMUSSNP3309121	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29378524					SNP	T	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13429961 () rs orientation: forward

Symbol	Name	Function Class
Adat2	adenosine deaminase, tRNA-specific 2	within coordinates
Cpgi1315	CpG island 1315	732 bp distal
Pex3	peroxisomal biogenesis factor 3	1075 bp upstream
Rr368928	regulatory region 368928	906 bp downstream
Rr427802	regulatory region 427802	1390 bp distal
Rr427803	regulatory region 427803	1313 bp distal
Rr427804	regulatory region 427804	1108 bp distal
Rr427805	regulatory region 427805	585 bp distal
Rr427806	regulatory region 427806	175 bp proximal
Tssr92399	transcription start site region 92399	978 bp downstream
Tssr92400	transcription start site region 92400	959 bp downstream
Tssr96771	transcription start site region 96771	1347 bp upstream
Tssr96772	transcription start site region 96772	1156 bp upstream
Tssr96773	transcription start site region 96773	1132 bp upstream
Tssr96774	transcription start site region 96774	1091 bp upstream
Tssr96775	transcription start site region 96775	1064 bp upstream
Tssr96776	transcription start site region 96776	1051 bp upstream