rs29378886 SNP Detail

Summary

• ID
  rs29378886
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:90918669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGCC GCCGCGGCCG CGCGCGCGCG
  Y
  CCCGCCCGGC GCGTGACCGC AAGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38645588	mCV24611863	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	C	C
ss147290249	ENSMUSSNP555811	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		C
ss323387278	CHEV_10_90545552	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29378886					SNP	C	T	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:90918669 () rs orientation: forward

Symbol	Name	Function Class
Apaf1	apoptotic peptidase activating factor 1	37 bp upstream
Cpgi2099	CpG island 2099	within coordinates
Ikbip	IKBKB interacting protein	133 bp upstream
Rr402144	regulatory region 402144	47 bp upstream
Rr436976	regulatory region 436976	389 bp distal
Rr436977	regulatory region 436977	within coordinates
Tssr95222	transcription start site region 95222	704 bp downstream
Tssr95223	transcription start site region 95223	217 bp upstream
Tssr95224	transcription start site region 95224	229 bp upstream
Tssr95225	transcription start site region 95225	274 bp upstream
Tssr98900	transcription start site region 98900	230 bp upstream
Tssr98901	transcription start site region 98901	146 bp upstream
Tssr98902	transcription start site region 98902	107 bp upstream
Tssr98903	transcription start site region 98903	34 bp upstream
Tssr98904	transcription start site region 98904	within coordinates