rs29379554 SNP Detail

Summary

• ID
  rs29379554
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:8858605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACCAATGA GGAACCTCGC
  CAGCTTCTGC AGACGTGCAC TTATCTGTCT ATTTATATCC CTGTTATGTT CATTTATTCT
  CATCCCCTGT ATGAAGCATG TCCCAGGGAT GAGAGTCATT TTACATTTTT ATATCTTCAT
  TTCCTCACAG AGGAGTGTTT TTTCAGAATA TTTAAGTTAA AGATATTAGT TGAATGAATG
  K
  CTTTTGAACC AAATGGATAC AGTTTGCATT GAGTTGTAGG TTGACAGTTC ATACGTCATC
  CACTTAGTTT CTATGAATCT CTTTTGTGTG AATTGTTAAG CCAGATCAAT GTACCTGGCT
  CTTAGGCAAT AATGTTTTTT TAATCTTTTG AATAAATATT GAATGTTCCC TTGGGGCTGG
  AGAGATGGCT TAGCTGTTAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38649591	mCV25039721	ABI	CRAMUS_MOUSE	f	SNP	G		T					G		G
ss52141014	NES15241414	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	T	G		G	G	G	G		T	G	G	T		G
ss146769181	ENSMUSSNP5703838	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							G
ss323246166	CHEV_10_8702659	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29379554					SNP	G	T	T	T	T	T	G	G	G	G	G	G	T	T	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52141014	NES15241414	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8858605 () rs orientation: forward

Symbol	Name	Function Class
Rr223851	regulatory region 223851	within coordinates
Rr223852	regulatory region 223852	473 bp proximal