rs29379670 SNP Detail

Summary

• ID
  rs29379670
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:122527199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGTCCCG GTTTGCTCAG
  GGTCTCTTGT GGTGTGGACA GGCCAATTCT GGTTTTTTTG GCATGTAAAT TCATACTATT
  TTTTTACACT ATCTCTGACT TAATTTTCTC TGTAGTACTG GTTCTCAACC TTCCTGAAGC
  CGTGACCCTC TTTAATACAA TTCCTCGTGC TGTGGTGAGC CCTGACTGCA AGATTATTTT
  Y
  ATTTTACTAC TTCATAACTA TAATCTTACT ACTCTTATGA ATCATAATGT AAATATTTTT
  GGAGTGAGGG GCTTGCCAAA GGGGCTGTGA CCTACAGGTT AAGACCTGCT GCTCTAAGTG
  GCTGTACAAG TTAAACACTA ACAAGTGTTT CCTGAGGACG GATTTTAATG CTTTCTGGAT
  ATGATAAAGA TATAATAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38648835	mCV23854513	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss147651250	ENSMUSSNP260307	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29379670					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:122527199 () rs orientation: forward

Symbol	Name	Function Class
Ppm1h	protein phosphatase 1H (PP2C domain containing)	within coordinates
Rr226290	regulatory region 226290	1203 bp proximal