rs29379996 SNP Detail

Summary

• ID
  rs29379996
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:25758827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCACTGT ACTTCAGAGG
  AGGCAGACAG GAGCCCTGCT TTTCTTGATC GAGCTAAAAA TAACTCATTT GTAAGGTGTG
  TTACCATTAC CTCCTTCAAG AAGCAGGGAA AATAAAATCA CCCTTGCTGT TGGTGAGGGT
  GAGAAGACAG TCGGGCCGGC AGGTGTGGAG CAGCAGCTTT GCCCTCCCCA AAGGGCACTA
  W
  TTTTTTTCTG ATGGAATAGC TGGAGTGACA GGAGCAGTTT TTGCCTCTCA CTAGCTGGCG
  ACTGAACGAC ACACAAGCTG TGATTCCTGC CCCATCCCCC TCAGAAGTAG GAAAGCACAG
  GAAAAGCCAA GATACTGGTG AGAAAACCTA TTCTAACTGG TAAACAGGAG AGGTTTCATA
  TATTTACAGA GAAGCAATTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss38650467	mCV25109210	ABI	CRAMUS_MOUSE	f	SNP	T	T		A
ss147013857	ENSMUSSNP6987969	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss323277629	CHEV_10_25602735	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29379996					SNP	T	T	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:25758827 () rs orientation: forward

Symbol	Name	Function Class
Gm47930	predicted gene, 47930	744 bp upstream
Gm66740	predicted gene, 66740	within coordinates
Rr218979	regulatory region 218979	within coordinates
Rr218980	regulatory region 218980	374 bp proximal