rs29380514 SNP Detail

Summary

• ID
  rs29380514
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:5311672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAT CTGCCTTATA AGCTTATGGG
  Y
  ATTTTATCCA AGGCTACCAA CCTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss38650663	mCV23712678	ABI	CRAMUS_MOUSE	f	SNP		T					T		C
ss52118976	NES15249085	PERLEGEN	MM_PANEL2	r	SNP	A		A	A	A	A		A		G	A
ss146737424	ENSMUSSNP3225345	ENSEMBL	ENSEMBL_Sanger	r	SNP		A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs29380514					SNP	T	T	T	T	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52118976	NES15249085	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:5311672 () rs orientation: forward

Symbol	Name	Function Class
Rr222920	regulatory region 222920	783 bp distal
Rr384081	regulatory region 384081	365 bp downstream
Syne1	spectrin repeat containing, nuclear envelope 1	within coordinates