rs29380812 SNP Detail

Summary

• ID
  rs29380812
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:93731542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTA GAAATGTTTC TAGATCATTC
  R
  ATGAGCCTCT TTAAAGAAGA ATCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38651781	mCV24979073	ABI	CRAMUS_MOUSE	f	SNP	G	G					A		G
ss50904640	NES14161101	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G		G	G	G	G		A	G	G	G		G
ss147372004	ENSMUSSNP441448	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss323405826	CHEV_10_93358425	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29380812					SNP	G	G	A	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50904640	NES14161101	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:93731542 () rs orientation: forward

Symbol	Name	Function Class
4930471D02Rik	RIKEN cDNA 4930471D02 gene	1469 bp upstream
Metap2	methionine aminopeptidase 2	within coordinates
Rr437346	regulatory region 437346	1210 bp proximal
Rr437347	regulatory region 437347	1744 bp proximal
Tssr95291	transcription start site region 95291	1476 bp upstream
Tssr95292	transcription start site region 95292	1484 bp upstream