rs29380813 SNP Detail

Summary

• ID
  rs29380813
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127128123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTGG GGGATCTGAG CAGAGGAATG
  R
  TCATAGCACA TGCATTTAAT TCCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38651783	mCV25221168	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	A	G
ss147730860	ENSMUSSNP6269435	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29380813					SNP	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127128123 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2350	CpG island 2350	1031 bp distal
Ddit3	DNA-damage inducible transcript 3	within coordinates
Gm4189	predicted gene 4189	228 bp upstream
Gm66222	predicted gene, 66222	1741 bp downstream
Rr369092	regulatory region 369092	1485 bp downstream
Rr402324	regulatory region 402324	621 bp downstream
Rr440867	regulatory region 440867	1415 bp distal
Rr440868	regulatory region 440868	1614 bp distal
Rr440869	regulatory region 440869	367 bp distal
Rr440870	regulatory region 440870	754 bp proximal
Tssr96180	transcription start site region 96180	1451 bp downstream
Tssr99764	transcription start site region 99764	1894 bp upstream