rs29381019 SNP Detail

Summary

• ID
  rs29381019
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86167085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGAAGGA AAAGCAGAGT
  ATTGGGACAG AAGAGAGTAG CCTGGCCTGC AGAGACAGGC TTCCAAGGGG AGGCTGCATT
  TCAGTTAAAA GGACCCTGAT GTGTAGATAC ATTCATGGGA AGGAGGTAGA AGCCCACGAA
  GCACCTTCCT GGTGCCTTGC AAACTTACGC CACAGAAATA CCATGTGCTT CCTCAGATTG
  K
  ATGCCCTTGC TCCCAGCTAA GTCAACTTTA TATCCAGGAA CCAGCCACCT TAGGACTTTT
  GCCCTGTCCT TGGCAAAATG ATGCATATAT CTTTCTCCCA AATTGCCAGT GGCCCAGGAA
  GCAATTAAGG ATGGCTGCCT TTAAAAGCAA GTGCATTAAT CCAAACCTCA GAAGGTGCCT
  GAGGCTGACG ACCCCTGCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38652433	mCV24714880	ABI	CRAMUS_MOUSE	f	SNP		T	T					G		G
ss47922509	NES12032696	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	G	T		G	G	G		G	T	G	G		G
ss147219095	ENSMUSSNP5411263	ENSEMBL	ENSEMBL_Sanger	f	SNP			T							G
ss323373796	CHEV_10_85793966	CHEVERUD	SCREENING_POP	f	SNP												T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29381019					SNP	G	T	T	T	T	G	T	G	G	G	G	T	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47922509	NES12032696	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86167085 () rs orientation: forward

Symbol	Name	Function Class
Gm57766	predicted gene, 57766	1905 bp downstream
Rr436451	regulatory region 436451	1422 bp distal
Rr436452	regulatory region 436452	277 bp proximal
Rr436453	regulatory region 436453	1486 bp proximal
Syn3	synapsin III	within coordinates
Timp3	tissue inhibitor of metalloproteinase 3	within coordinates
Tssr94967	transcription start site region 94967	405 bp upstream
Tssr94968	transcription start site region 94968	431 bp upstream