rs29381226 SNP Detail

Summary

• ID
  rs29381226
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:12746279 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACCT CTGGAGTCTC TAAGTACTGT
  R
  GGCTGGGACT GAAGGAAGTC TTGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38653349	mCV23882745	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss146804309	ENSMUSSNP203587	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29381226					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:12746279 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1301	CpG island 1301	792 bp distal
Gm66629	predicted gene, 66629	within coordinates
Rr224421	regulatory region 224421	678 bp distal
Tssr3138	transcription start site region 3138	1048 bp upstream
Tssr92369	transcription start site region 92369	1554 bp downstream
Tssr96726	transcription start site region 96726	1398 bp upstream
Tssr96727	transcription start site region 96727	1313 bp upstream
Tssr96728	transcription start site region 96728	1018 bp upstream
Tssr96729	transcription start site region 96729	894 bp upstream
Utrn	utrophin	1170 bp upstream