rs29381509 SNP Detail

Summary

• ID
  rs29381509
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127346135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTG ATGTAGGGGT GTCGTGGAAC
  R
  GGGAGAGCGG CTGTTCTCTC CCTAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38652332	mCV22968926	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss147732720	ENSMUSSNP6767657	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29381509					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127346135 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2359	CpG island 2359	1940 bp distal
Cpgi2360	CpG island 2360	670 bp distal
Cpgi2361	CpG island 2361	1275 bp proximal
Rr402328	regulatory region 402328	1601 bp downstream
Rr402329	regulatory region 402329	935 bp downstream
Rr440928	regulatory region 440928	1117 bp distal
Rr440929	regulatory region 440929	505 bp distal
Rr440930	regulatory region 440930	1660 bp proximal
Rr440931	regulatory region 440931	1823 bp proximal
Stac3	SH3 and cysteine rich domain 3	1443 bp downstream