rs29381712 SNP Detail

Summary

• ID
  rs29381712
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80064220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACGTCTCAA GACCAGGCTC
  TGAATTGACC TGTGTCCTAG AAGCTGGGTG TGCGGCTAGC CTCTGCCCTG GAAGATTGTG
  TCTGTGTGAA CCTCACTGCT GCAAGCAGCA CCTTTCTAAA ACACATTTCA TTGCAGGGGA
  CCTCTGGCCT CAGTCAAGCC TGTACCACCG CACGCCCAGA TACTCCTTTC TGAGTCATGA
  Y
  GGATGCCAAG TATGTCCTCT GCCGATGGGG GAAGCGACTG TGGCCTGCGA AGGTGACAGC
  CCTTATTCTC TTAATTTCAG GAATTAGAAA TGACTTTTGG TGACAATAAA GTCTTCATCA
  GGCTCTGTTC CTCAGAGTAA CTATGAGAGA GAGCCGAGCC TGAATGCTCG GCACTGGGAT
  CTGCTGGCAC GAGTCCCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss38653241	mCV24227718	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss147179108	ENSMUSSNP2307865	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29381712					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80064220 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1860	CpG island 1860	1269 bp distal
Pwwp3a	PWWP domain containing 3A, DNA repair factor	within coordinates
Rr402040	regulatory region 402040	1794 bp downstream
Rr435156	regulatory region 435156	1942 bp distal
Rr435157	regulatory region 435157	726 bp distal
Rr435158	regulatory region 435158	1806 bp distal
Rr435159	regulatory region 435159	6 bp distal
Tssr3277	transcription start site region 3277	34 bp downstream
Tssr94522	transcription start site region 94522	1634 bp downstream
Tssr94523	transcription start site region 94523	1624 bp downstream
Tssr94524	transcription start site region 94524	1603 bp downstream
Tssr94525	transcription start site region 94525	1587 bp downstream