rs29381842 SNP Detail

Summary

• ID
  rs29381842
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:3669640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATAAATT TCCTTGGGAT
  CTGGATTTAT GGAGATGGTA AAAGTCCTCA TAAATGGGTT CCAGGTGATA GACCCAACTG
  GCTGTCAGGC CACCCTTGGG TTACTACATG GATATTAGCA TAACTCAGAA ATATTGGCAG
  AACAGGTATG CTGATGTTTT TCTTCTACCA TGTCTTTGGA AGGATTTCCA CTGAAGTTAC
  M
  ATGCCCAGGA TAACTTAGGA ACAGGGAAAC ACTGCAAATC CCAACCTTCC TCCAAGATTT
  CTTTCTGAGT GATCACAATC TTCAGGATCA GTTTCTTCCA TGACCTTGCT AGTACAGTGA
  GGAGGCAGCC CATCCCTGCA TGGAACCAAG CCTCATGTCT CATCAGCAAG TGGGTCGCAT
  GTTGTGATAT TCTAACAACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38655618	mCV25387218	ABI	CRAMUS_MOUSE	f	SNP	C	C		A		A
ss52125771	NES15247316	PERLEGEN	MM_PANEL2	r	SNP			T		G	T	T		G	T	T	G		G
ss146748638	ENSMUSSNP5981834	ENSEMBL	ENSEMBL_Sanger	r	SNP	G	G				T
ss323242482	CHEV_10_6626901	CHEVERUD	SCREENING_POP	r	SNP								G					G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29381842					SNP	C	C	A	A	C	A	A	C	C	A	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52125771	NES15247316	PERLEGEN	MM_PANEL	r	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:3669640 () rs orientation: forward

Symbol	Name	Function Class
A330032P22Rik	RIKEN cDNA A330032P22 gene	within coordinates
Gm30164	predicted gene, 30164	1501 bp downstream
Gm56946	predicted gene, 56946	within coordinates
Rr426848	regulatory region 426848	1467 bp distal
Rr426849	regulatory region 426849	819 bp distal
Tssr92213	transcription start site region 92213	1472 bp downstream