rs29382454 SNP Detail

Summary

• ID
  rs29382454
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:67974473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGACT GTGAGGAGGA GTGGGTCTCT
  Y
  ACTCTTGTGC ATGCTCCTGG GGCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38656095	mCV24239173	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss147146200	ENSMUSSNP6249912	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss323351608	CHEV_10_67601391	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29382454					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:67974473 () rs orientation: forward

Symbol	Name	Function Class
Arid5b	AT-rich interaction domain 5B	within coordinates
Cpgi1679	CpG island 1679	1950 bp distal
Rr384864	regulatory region 384864	243 bp downstream
Rr433199	regulatory region 433199	1527 bp distal
Rr433200	regulatory region 433200	202 bp distal
Rr433201	regulatory region 433201	617 bp proximal
Tssr3230	transcription start site region 3230	1907 bp upstream
Tssr3231	transcription start site region 3231	1886 bp upstream
Tssr3232	transcription start site region 3232	1809 bp upstream
Tssr93877	transcription start site region 93877	1616 bp downstream
Tssr93878	transcription start site region 93878	847 bp downstream
Tssr97994	transcription start site region 97994	1966 bp upstream
Tssr97995	transcription start site region 97995	1947 bp upstream
Tssr97996	transcription start site region 97996	1935 bp upstream
Tssr97997	transcription start site region 97997	1921 bp upstream
Tssr97998	transcription start site region 97998	1861 bp upstream
Tssr97999	transcription start site region 97999	1435 bp upstream
Tssr98000	transcription start site region 98000	1269 bp upstream