GGTAA CACTGGCACA GAATCTCCAT M TTTAACTGTG ATTGACTACT GTCAA M = A/C Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
BTBR T<+> Itpr3 |
C57BL/6J |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss38654665 | mCV22877332 | ABI | CRAMUS_MOUSE | f | SNP | A | C | A | |||||||||
ss61319846 | NES16926079 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | C | A | A | C | C | A | C | |||
SNP Consensus Information | |||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
BTBR T<+> Itpr3 |
C57BL/6J |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
WSB/EiJ |
||||
rs29382472 | SNP | A | A | C | A | A | C | A | A | C | C | A | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss61319846 | NES16926079 | PERLEGEN | MM_PANEL | f | SNP | A/C |
Location: Chr10:115667884 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Rr385334 | regulatory region 385334 | 1281 bp upstream | ||||||
Rr439263 | regulatory region 439263 | 1827 bp proximal | ||||||
Tspan8 | tetraspanin 8 | Intron | ||||||
Tssr95839 | transcription start site region 95839 | 1060 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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