rs29382475 SNP Detail

Summary

• ID
  rs29382475
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:90918088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTGT GCTGGGAAGA GCAGCCGGGG
  K
  AGGGTCACTG ATGATAATCG AAAGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss38654250	mCV24611875	ABI	CRAMUS_MOUSE	f	SNP	T	T	G
ss147290234	ENSMUSSNP2994911	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss323387275	CHEV_10_90544971	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29382475					SNP	T	T	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:90918088 () rs orientation: forward

Symbol	Name	Function Class
Apaf1	apoptotic peptidase activating factor 1	within coordinates
Cpgi2099	CpG island 2099	within coordinates
Ikbip	IKBKB interacting protein	714 bp upstream
Rr402144	regulatory region 402144	628 bp upstream
Rr436976	regulatory region 436976	within coordinates
Rr436977	regulatory region 436977	193 bp proximal
Tssr95222	transcription start site region 95222	123 bp downstream
Tssr95223	transcription start site region 95223	798 bp upstream
Tssr95224	transcription start site region 95224	810 bp upstream
Tssr95225	transcription start site region 95225	855 bp upstream
Tssr98900	transcription start site region 98900	330 bp downstream
Tssr98901	transcription start site region 98901	427 bp downstream
Tssr98902	transcription start site region 98902	457 bp downstream
Tssr98903	transcription start site region 98903	478 bp downstream
Tssr98904	transcription start site region 98904	557 bp downstream