rs29382926 SNP Detail

Summary

• ID
  rs29382926
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96182074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCAATTTA TTTTTACTTT
  ATGTATTTAA ATCTATTTCA TTCTAAATTG GCATGGGCGA TCCACATGAA ATTTTTAAAT
  TGAAGGGAAA CCAGTCCCGG CGAGCGACAG TGAGTTTACC GGGCTGGGGT GCGTCCGCAG
  TGAGCCTGGC AGCACCGGAC GCCAGGGCTT CCTCTGGGCC GTTCGGCCTG CTCCTGAGTA
  Y
  GGCCAACCTG GAACCTTCTG AGGGGCACAC ACACACACAG GAGGGGGAGG GAGAGAAAAA
  TATGTTTTTT TTAAAGGGGA TTATTTCGTT TTCTGCGTTT GGTTACCAGA AACTCAACCT
  AAAATGTAGT TTTTGTTTTT TTAAAGAAAG CCTAGGAAAA CGGAGTGAGT TATTGTTAAA
  ATAAAATCAA GGATTTCGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss38657645	mCV27575628	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss132676630	ENSMUSSNP1991019	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29382926					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96182074 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3638	CpG island 3638	1626 bp distal
Hoxb5os	homeobox B5 and homeobox B6, opposite strand	within coordinates
Hoxb6	homeobox B6	1573 bp upstream
Hoxb7	homeobox B7	1086 bp downstream
Rr386515	regulatory region 386515	within coordinates
Rr455356	regulatory region 455356	738 bp proximal
Rr455357	regulatory region 455357	1239 bp proximal
Tssr104478	transcription start site region 104478	905 bp upstream
Tssr104479	transcription start site region 104479	1205 bp upstream
Tssr110325	transcription start site region 110325	1720 bp upstream