rs29383171 SNP Detail

Summary

• ID
  rs29383171
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127030850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CAGGATGAAG GTCGTACACG CCACCTCCCT CAGATTACAC TGACAGAAAT ATCTCCTAAA
  CTCCTCGCTT TACGTTCTCG AATAGTTCAA GTCCCTGTTG TTGACAGAGA CCTTTCCTTG
  AGAGCCGGAA GTCTGTTAGG GATGCCAGCA AAGTGTTAGC AGTCCCGCAA TAACAAAGTT
  CTCATTGTCA CCTTTAAACC CAGTGCCCGC AGAGCTGCTG TCAGCTGCAA ATCAAGCAGG
  AGCTTGGCTA GAGGGACCCG AGGTTTTCCC CTGAGCCCTG TCACAGCCCA GCTCCAGGGC
  Y
  TTTCCCACAA CACAAAGTGC AGCTCAATTA GGAAGAGGGG CCATTCATGT GACCTCAATT
  CCTTGTGATC CAAAAAGAAG CCTCTGTCCG TTTGTGCCTC CATCATAGGG TCCTTGAGAT
  GAAAACCTAA GCATCTCAAC CCGCATGGTC TGTGCACGGT GAAATGCCCC CTCCCCACCA
  GAGAGAACCC AGGATCTAGG TGTCCTAGCT CCAAGTCCTG CTGGCACGGC ACAGGGAGGC
  GGGGCCACAG TTTAGTCTGG GTCTAGCATT CCTCTGGGGC AAACCAGGCC GGACACCAGA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss38656373	mCV23888380	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29383171					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127030850 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2345	CpG island 2345	150 bp proximal
Dtx3	deltex 3, E3 ubiquitin ligase	within coordinates
F420014N23Rik	RIKEN cDNA F420014N23 gene	268 bp upstream
Gm57007	predicted gene, 57007	within coordinates
Rr224404	regulatory region 224404	within coordinates
Tssr96170	transcription start site region 96170	259 bp upstream
Tssr99735	transcription start site region 99735	1821 bp upstream
Tssr99736	transcription start site region 99736	217 bp downstream
Tssr99737	transcription start site region 99737	732 bp downstream