rs29383976 SNP Detail

Summary

• ID
  rs29383976
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70909005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAGTTTGGT ATATAAGGAG TTCCCAAATA CTTAGCAGCT
  CTCAAACCAT TCTAGAGTCC AACCAGGCTG TGGAATGCCC TCTTTACATC TCAAAAAGAC
  Y
  TGTAATCAGA GATTCCCCTA CTGGGTTATT TTTTTTGAGA CTCTATTTCA CAGGATTTAC
  TACTTACTAA ACGATACGAA AAAAAAAAAG ATAATGAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38656947	mCV24105017	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss132379916	ENSMUSSNP3538172	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss323738897	CHEV_11_70831681	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29383976					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70909005 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3205	CpG island 3205	785 bp proximal
Derl2	Der1-like domain family, member 2	within coordinates
Mis12	MIS12 kinetochore complex component	1432 bp upstream
Rr369277	regulatory region 369277	1600 bp upstream
Rr402697	regulatory region 402697	1026 bp upstream
Rr450471	regulatory region 450471	1053 bp proximal
Rr450472	regulatory region 450472	1443 bp proximal
Rr450473	regulatory region 450473	1652 bp proximal
Tssr102806	transcription start site region 102806	1391 bp upstream
Tssr102807	transcription start site region 102807	1414 bp upstream
Tssr102808	transcription start site region 102808	1447 bp upstream
Tssr102809	transcription start site region 102809	1462 bp upstream
Tssr102810	transcription start site region 102810	1689 bp upstream
Tssr102811	transcription start site region 102811	1716 bp upstream
Tssr109052	transcription start site region 109052	319 bp downstream
Tssr109053	transcription start site region 109053	1054 bp downstream
Tssr109054	transcription start site region 109054	1091 bp downstream