rs29384225 SNP Detail

Summary

• ID
  rs29384225
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70910460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTCCTTTTG ACCCACGGCT AGCCAATCAG GAGTGCGATC
  CAGCCCGCCT TGGCGTTCGT TCGCAGAGGC AGGTCTCAGT CGATTCGGAG GAGCCGGTGT
  Y
  ACCGCCTTCT TCCAGCCGCT GAGTGTAGCT TGAAGGAAGT GGCGGGAAGC CGGTGTGGGG
  CGGAATCCAT CACTCCCGGG ATCGCTTCGG TAGGGGCTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38656817	mCV24105041	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss132379932	ENSMUSSNP5064248	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss323738905	CHEV_11_70833136	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29384225					SNP	T	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70910460 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3205	CpG island 3205	within coordinates
Derl2	Der1-like domain family, member 2	within coordinates
Mis12	MIS12 kinetochore complex component	within coordinates
Rr369277	regulatory region 369277	145 bp upstream
Rr402697	regulatory region 402697	128 bp downstream
Rr450471	regulatory region 450471	13 bp distal
Rr450472	regulatory region 450472	within coordinates
Rr450473	regulatory region 450473	197 bp proximal
Tssr102806	transcription start site region 102806	55 bp downstream
Tssr102807	transcription start site region 102807	17 bp downstream
Tssr102808	transcription start site region 102808	within coordinates
Tssr102809	transcription start site region 102809	7 bp upstream
Tssr102810	transcription start site region 102810	234 bp upstream
Tssr102811	transcription start site region 102811	261 bp upstream
Tssr109052	transcription start site region 109052	1113 bp upstream
Tssr109053	transcription start site region 109053	367 bp upstream
Tssr109054	transcription start site region 109054	344 bp upstream