rs29384481 SNP Detail

Summary

• ID
  rs29384481
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96189067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGC TGTGCTGGGC ATACGGATGG
  W
  CGGCTTGCCA AATAGCAATA GCAAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38657551	mCV27575683	ABI	CRAMUS_MOUSE	f	SNP	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29384481					SNP	T	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96189067 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3641	CpG island 3641	684 bp proximal
Hoxb5os	homeobox B5 and homeobox B6, opposite strand	within coordinates
Hoxb6	homeobox B6	within coordinates
Rr455361	regulatory region 455361	440 bp proximal
Tssr3658	transcription start site region 3658	1012 bp upstream
Tssr104480	transcription start site region 104480	513 bp upstream
Tssr104481	transcription start site region 104481	543 bp upstream
Tssr104482	transcription start site region 104482	564 bp upstream
Tssr104483	transcription start site region 104483	805 bp upstream
Tssr104484	transcription start site region 104484	848 bp upstream
Tssr104485	transcription start site region 104485	871 bp upstream
Tssr104486	transcription start site region 104486	896 bp upstream
Tssr104487	transcription start site region 104487	966 bp upstream
Tssr104488	transcription start site region 104488	982 bp upstream