rs29384812 SNP Detail

Summary

• ID
  rs29384812
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:114782121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAACTCAC AGAGACTGCC
  TTTCTCGGCC TCCAAAATGC TGGGATTAAA GGTGTGCACC ACCACACCCC ACAGACTTCT
  TTTTTGGTTC TTTACTCTTC GAAAATTTCA TGTATGTGAA CAATGTAGTC TGACCATATC
  TGACCTCCCC AAGTCTGATT CCCCAAGTCT GTTCAACACA TCTCCCTCCA ACTTAGTATT
  R
  TTTATATATT TTTTAAAAAA ACCATTGAAT GATTAGCACT GGCTCTATGC ACGTGGGTAT
  GGGGTCATCC ACTGGGGCAG AGGCAACCTG CCAATAGCCA CACCCCTAAA GGAAAAAATT
  TCTAATCCCA GTACTCTGGA GGCAAAGGCG GGCAGATCTC TGTAAGTTTA AGACCAGCCT
  ATTCTACATA GTAAGTTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38663057	mCV25148319	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	A
ss132864694	ENSMUSSNP7241374	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29384812					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:114782121 () rs orientation: forward

Symbol	Name	Function Class
Cd300a	CD300A molecule	within coordinates
Cpgi4106	CpG island 4106	924 bp distal
Rr459730	regulatory region 459730	949 bp distal
Tssr105810	transcription start site region 105810	1092 bp downstream
Tssr105811	transcription start site region 105811	1069 bp downstream
Tssr105812	transcription start site region 105812	925 bp downstream
Tssr105813	transcription start site region 105813	909 bp downstream
Tssr105814	transcription start site region 105814	250 bp downstream
Tssr111666	transcription start site region 111666	1069 bp upstream