rs29385388 SNP Detail

Summary

• ID
  rs29385388
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88890407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTC ACCACTCCGT GCGGCCACAA
  Y
  TTCTGCATGT CATGCCTGGA TGAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38664115	mCV22657604	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss132549627	ENSMUSSNP2628231	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss323783685	CHEV_11_88860895	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29385388					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88890407 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3524	CpG island 3524	within coordinates
Gm11496	predicted gene 11496	150 bp upstream
Rr386439	regulatory region 386439	1280 bp downstream
Rr402858	regulatory region 402858	16 bp downstream
Trim25	tripartite motif-containing 25	within coordinates
Tssr104062	transcription start site region 104062	147 bp downstream
Tssr104063	transcription start site region 104063	102 bp downstream