rs29385397 SNP Detail

Summary

• ID
  rs29385397
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:72907407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GATGTAAAAG CCACGGGGAC ACTTGGTCCT GCATCTTGTT TGGCTCCCAG CATTTAACCG
  TTTTTCAAAG ATTCGTTCTA GTGGTACCCC AGTGCAGCCT CTCCTGGTTT CCCGGCAGGC
  ATGGAGTGTA GGGGAAGAAG GCCTCTTACA GCTCTCATAT GGCTCACCCT GTGTCTTTGG
  TAAGTGGCTT CTCTCCAAGG CTCCTCGGTG TGTCTGGGTA CTGGTGGCAA CCTCTGCTAG
  GGTTGAGGTA ATACATGTGA AGTGCCCAAG GCAGTGCCTG ATATACATTG TCTCTGGAAC
  W
  CACACACACA CACACACACA CACACACACA GGGTCTTCTT GGTTTCTTGG TGCTATAATC
  CTTGCTCCTT GGTTGGGCTT TTGGCTGCCT ATGATGGAGG TTGCATTTGT TGTTGGTGGT
  GGTGGTAGGT TTTTTCCCCT TTCTTTCCTT TTTTTGTTTT GTTTTGCTTT GCTTTGTTTC
  GAGATACGTT TCTCTATGTA GCTTTGGCTG TTCTGGAACT CGCTCTATAG TCCAGGCTGG
  CCTTGAACTT GGAGATCTAC CTGCGTCTGC CTCTGAGTGT TGGGATTAAA GGGATCCACC
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss38661120	mCV23952612	ABI	CRAMUS_MOUSE	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29385397					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:72907407 () rs orientation: forward

Symbol	Name	Function Class
4732414G09Rik	RIKEN cDNA 4732414G09 gene	within coordinates
Cpgi3228	CpG island 3228	1914 bp proximal
P2rx1	purinergic receptor P2X, ligand-gated ion channel, 1	1381 bp downstream
Rr247151	regulatory region 247151	1593 bp proximal
Rr369285	regulatory region 369285	1187 bp downstream