rs29385409 SNP Detail

Summary

• ID
  rs29385409
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:6017029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTGATGG ACTCAGATCT
  CAACCAAAGA CTAGCCCTGG ACTGCAGGAT CTTCTTAGTC TAGCAAGTGT CTTCTTAGGA
  GAATGAGGGG TCTCTGCTGG GCAGCTACTA GAGGTCTTCC TAAAGGTACA TTTGACAGAG
  TGCTGCCAGG GGAAGCTAGG CCTCCTGGCA AGTCCCTGTA CAGACCTAGC CCCACCAGAA
  R
  GCAAACAGCT AGCAAACAAG AGACAGGCAT GGGCAAGTGC AGGTCCCAGT TACAAGTGTC
  TGGCTGAGAA AATAGGAACC CTGGCCCCAA GCAGAAAGGG AAACTCTACT GTGCCCCCCC
  AAAAGTATGA GTTTAGATGG GGACGCTGGA CCATGCGCTG CTGGGCCATG CGATGGGCAC
  GGGAAGAGTG GGGTGAGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss38660089	mCV22908208	ABI	CRAMUS_MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs29385409					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:6017029 () rs orientation: forward

Symbol	Name	Function Class
Camk2b	calcium/calmodulin-dependent protein kinase II, beta	667 bp upstream
Cpgi2551	CpG island 2551	512 bp distal
Cpgi2552	CpG island 2552	1242 bp proximal
Gm74282	predicted gene, 74282	within coordinates
Rr442230	regulatory region 442230	1502 bp distal
Rr442231	regulatory region 442231	791 bp distal
Rr442232	regulatory region 442232	1006 bp proximal
Rr442233	regulatory region 442233	1501 bp proximal
Tssr106682	transcription start site region 106682	1394 bp upstream
Tssr106683	transcription start site region 106683	1366 bp upstream
Tssr106684	transcription start site region 106684	1341 bp upstream
Tssr106685	transcription start site region 106685	1301 bp upstream
Tssr106686	transcription start site region 106686	1274 bp upstream
Tssr106687	transcription start site region 106687	1250 bp upstream
Tssr106688	transcription start site region 106688	1118 bp upstream
Tssr106689	transcription start site region 106689	909 bp upstream
Tssr106690	transcription start site region 106690	892 bp upstream
Tssr106691	transcription start site region 106691	664 bp upstream
Tssr106692	transcription start site region 106692	645 bp upstream
Tssr106693	transcription start site region 106693	618 bp upstream