rs29385534 SNP Detail

Summary

• ID
  rs29385534
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70401609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGCTGTGT GGAATTCAGC TGGTGAATGC GACCTTTGGT
  GTGTTGTGTG GCGATTGCAG GAAAAAGGAG GTAGGACTGC TTGGGGGCGT TCTTGGGGGT
  R
  GAGGCTGAGA AATCCTGTTT GATCTTGGCT TCATCTTTAC TCTTTCTCTT TCTTGCAGGG
  TGCAGCTCAC TGAGTCCCAT AGGCCACCCC TAATACCTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss38664688	mCV22858047	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss132372164	ENSMUSSNP307123	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G		G
ss323735915	CHEV_11_70324285	CHEVERUD	SCREENING_POP	f	SNP				A		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs29385534					SNP	A	A	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70401609 () rs orientation: forward

Symbol	Name	Function Class
Gm73079	predicted gene, 73079	513 bp upstream
Rr235912	regulatory region 235912	209 bp distal
Rr247104	regulatory region 247104	408 bp distal
Rr251336	regulatory region 251336	1307 bp proximal
Tm4sf5	transmembrane 4 superfamily member 5	within coordinates
Tssr102717	transcription start site region 102717	990 bp downstream
Tssr102718	transcription start site region 102718	793 bp downstream
Tssr102719	transcription start site region 102719	584 bp downstream
Tssr102720	transcription start site region 102720	528 bp downstream
Tssr102721	transcription start site region 102721	54 bp upstream
Tssr102722	transcription start site region 102722	279 bp upstream
Tssr102723	transcription start site region 102723	307 bp upstream
Tssr108976	transcription start site region 108976	385 bp downstream