rs29386446 SNP Detail

Summary

• ID
  rs29386446
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96198452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAGGGGG TCTTGTGGGG
  TCCATGTTCC TTCAATGTCT TTGGAAATTA GGGGACAAGA AAGAGGGATG TGGACTGCTG
  GGATAAAGGT TGGTGGGGGG GTGTCTTCAG AGAGATCTCC CTTAGTCCCA AGGAAAGAAA
  CTTTATGGAA TTTGTTTGGG GTGTGTTGGG GGCACACTCC GCGCCCCCCC CCCCCGCAGG
  Y
  CGTTTTTTAC CTGGATACAT TTAGAGAAAA GGATAGGGAA GGTGGCTGCT GTGGGCTACC
  TTGCCCTGAA ATGTTTTCTG GGTTTTTAAC GTCTGCCCCT GCACTCTCTA TGGTCTCCCC
  AGGGTTATCC AGAATTCCGG GAGCTCGGTG CTTTTTATAC CCAACTTCAT CCTGTTGGTC
  TTAAATTGAT TTCTTTTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss38665374	mCV27575729	ABI	CRAMUS_MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs29386446					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96198452 () rs orientation: forward

Symbol	Name	Function Class
Gm74526	predicted gene, 74526	within coordinates
Hoxb5	homeobox B5	1505 bp downstream
Hoxb5os	homeobox B5 and homeobox B6, opposite strand	716 bp upstream
Rr455366	regulatory region 455366	533 bp distal
Rr455367	regulatory region 455367	within coordinates
Rr455368	regulatory region 455368	1220 bp proximal
Tssr104501	transcription start site region 104501	1083 bp downstream
Tssr104502	transcription start site region 104502	571 bp downstream
Tssr104503	transcription start site region 104503	530 bp downstream
Tssr104504	transcription start site region 104504	498 bp downstream
Tssr104505	transcription start site region 104505	471 bp downstream
Tssr110327	transcription start site region 110327	711 bp upstream
Tssr110328	transcription start site region 110328	1247 bp downstream