rs29386859 SNP Detail

Summary

• ID
  rs29386859
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:71640056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTCTGTTTC CCAATAACCC TAAACTCTGT TTTAAAATTA
  CACCTTTGCA GATCTGCAAC CCTGTAGGTG CAACACTATG AACTAACCAG TACCCCAGAG
  Y
  TCTTGATTCT AGCTGCATAT GTATCAAAAG ATGGCCTAAT CAGCCATCAC TGGAAAGAGA
  GGCCCATTGG ACACGCAAAC TTTATATGCC CCAGTACAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss38660183	mCV23438283	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss132393496	ENSMUSSNP5871090	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss323743708	CHEV_11_71562732	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs29386859					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:71640056 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3209	CpG island 3209	1188 bp proximal
Rr236016	regulatory region 236016	345 bp proximal
Rr241547	regulatory region 241547	256 bp distal
Rr247127	regulatory region 247127	544 bp proximal
Tssr102813	transcription start site region 102813	684 bp upstream
Tssr102814	transcription start site region 102814	1450 bp upstream
Tssr102815	transcription start site region 102815	1752 bp upstream
Tssr102816	transcription start site region 102816	1768 bp upstream
Tssr102817	transcription start site region 102817	1826 bp upstream
Wscd1	WSC domain containing 1	690 bp upstream