rs29387089 SNP Detail

Summary

• ID
  rs29387089
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69806968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACTCAGA CAGGTGAGAT
  CCCCCTGGGC AGGAGCCCTA CCTTCAGGAG TCCTACTGCC ACCTGCTCAT TTCAAACTCT
  CCTCCCCTCA GGGTTCCTCC AGCCCGGCAG TACCCTCTCT TTGCAGAAAC AGATGGAGCA
  TGCCAACCAG CAGACCAGCT TCTCGGACTC AGTGAGTATG GAGTCCTGGG AGGCCAAGGT
  R
  CTAAGATGAG GGGAGCCCCA GGATGCCTCC CTTTAAGGTC AGCTTTGTCT CCTAGTCTTC
  TCTGCGGCCC ATGCACCCCC AAGCTCTGCA TCCAGCCCCT GGACTCCTGG CTTCCCCCCA
  GCTTCCCGTA CAGATACAAG CAGCAGGGAA GGTAAGGCTG GCAATCAAAC CTACATATAC
  TACCAGGGAA AGACTAACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38663204	mCV23933445	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss132362930	ENSMUSSNP6321035	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29387089					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69806968 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3157	CpG island 3157	1433 bp distal
Eif5a	eukaryotic translation initiation factor 5A	572 bp downstream
Gm72765	predicted gene, 72765	570 bp upstream
Gps2	G protein pathway suppressor 2	within coordinates
Rr235842	regulatory region 235842	within coordinates
Rr247070	regulatory region 247070	within coordinates
Rr247071	regulatory region 247071	1832 bp proximal
Tssr102553	transcription start site region 102553	1979 bp downstream
Tssr102554	transcription start site region 102554	1949 bp downstream
Tssr102555	transcription start site region 102555	1876 bp downstream
Tssr102556	transcription start site region 102556	1845 bp downstream
Tssr102557	transcription start site region 102557	87 bp downstream
Tssr102558	transcription start site region 102558	1158 bp upstream
Tssr108878	transcription start site region 108878	833 bp downstream
Tssr108879	transcription start site region 108879	1100 bp downstream
Tssr108880	transcription start site region 108880	1557 bp downstream