rs29387554 SNP Detail

Summary

• ID
  rs29387554
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:29121578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATGGACCCT GACCAAAACA TTCTACAGAG AATGCTCTGG
  GCACCTGAAA TTTCTGTCCT AAAGGCTGAG TGGGCTTCCA GGATCTATCC AGTGCTCTTG
  M
  CAACGTTCTT TTCTCCTTTA GAGTGGGCAA TGAAAAGGAT GCTTAGACAA ATCCTTGGGT
  GTCCTCTAAC ATTGGGCTAA AACACTGACT CTGGAAAGC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss38667845	mCV24536225	ABI	CRAMUS_MOUSE	f	SNP	C	A	C
ss131889916	ENSMUSSNP5239077	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29387554					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:29121578 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
A630052C17Rik	RIKEN cDNA A630052C17 gene			within coordinates
Ppp4r3b	protein phosphatase 4 regulatory subunit 3B			mRNA-UTR
				Noncoding-Transcript-Variant
Rr369144	regulatory region 369144			1104 bp upstream
Rr444150	regulatory region 444150			822 bp proximal
Rr444151	regulatory region 444151			1914 bp proximal
Tssr100691	transcription start site region 100691			1335 bp upstream
Tssr100692	transcription start site region 100692			1356 bp upstream
Tssr100693	transcription start site region 100693			1370 bp upstream
Tssr107208	transcription start site region 107208			1149 bp downstream