rs29387568 SNP Detail

Summary

• ID
  rs29387568
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96434417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AAGAGTAAAC TAGGAAAACC AGAACCTAGA ATCTGGGCTG TAGCTCAGTG TAGGATACTC
  GCCTAACATA TGCAAGGCCT GTTTTGATCC CCAAGACCGC AAACAAACAA ACAAACCAGC
  CACAAACAAA ACAAAGCAAA ACAAAAACAT ACAAAAGAGA GTTCCTAAAA TAAATAGAAC
  AGTACACAAA AAGGTAAGGT CTTTAGGTAA AATTTGTACA GAAATTTATA AAACTAAACC
  ATAGCAATCT GGGACTTACT TGTGTCCTAG AAAGAGACTG CTCACATCTT CCCTACCTAA
  S
  CCCCCCCCCA ACCCCCATGT CCTAGAGAGA GACTGCTCAC ATTCTCTCCC AGATGAATCA
  AAATGCTGAA AGCTGGCAGG TACTGATCAC TTCCTATGTG GCTTGACTTT GTGTCCTGAG
  CACCTCTGAT ACATTGGTTA GCCCTCACTG CAGCTCTGAG AGGTAGATGT TAGCATTTAC
  CTTCATCTTA CAAATGAAAC CCTGGGACCT AGCAGAGGTA ACTCACCCCA TCCCACCACT
  GTTGGGTAGG GGGACCGTGA TTTGTACCTG TTGTGTTGGT TCCAGAAGCC CTGTTGCTAA
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss38671669	mCV24752473	ABI	CRAMUS_MOUSE	f	SNP	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29387568					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96434417 () rs orientation: forward

Symbol	Name	Function Class
Rr252638	regulatory region 252638	within coordinates
Skap1	src family associated phosphoprotein 1	within coordinates
Tssr104542	transcription start site region 104542	1157 bp downstream
Tssr104543	transcription start site region 104543	1128 bp upstream
Tssr104544	transcription start site region 104544	1782 bp upstream
Tssr104545	transcription start site region 104545	1835 bp upstream
Tssr104546	transcription start site region 104546	1843 bp upstream
Tssr104547	transcription start site region 104547	1885 bp upstream
Tssr104548	transcription start site region 104548	1979 bp upstream
Tssr104549	transcription start site region 104549	1992 bp upstream