rs29387587 SNP Detail

Summary

• ID
  rs29387587
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94968764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGT CGTTGCCACC ACTATGTAAA
  Y
  CCAGGTCTGT ACCTGTCTCT CTATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38668061	mCV24742221	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss132653116	ENSMUSSNP2733536	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
ss323817660	CHEV_11_94939252	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29387587					SNP	C	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94968764 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3575	CpG island 3575	653 bp distal
Gm53645	predicted gene, 53645	within coordinates
Gm57362	predicted gene, 57362	within coordinates
Itga3	integrin alpha 3	1137 bp upstream
Tssr3652	transcription start site region 3652	1322 bp upstream
Tssr104346	transcription start site region 104346	987 bp downstream
Tssr110254	transcription start site region 110254	1349 bp upstream
Tssr110255	transcription start site region 110255	1283 bp upstream
Tssr110256	transcription start site region 110256	1216 bp upstream
Tssr110257	transcription start site region 110257	1120 bp upstream