rs29387723 SNP Detail

Summary

• ID
  rs29387723
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69047219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGT GTGGACCACT GTGCCTGACT
  Y
  TAGCCTGATC CCTTTGGGGG TTGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss38672912	mCV24154322	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss132349988	ENSMUSSNP1565139	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss323727810	CHEV_11_68969895	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs29387723					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69047219 () rs orientation: forward

Symbol	Name	Function Class
Alox12b	arachidonate 12-lipoxygenase, 12R type	679 bp upstream
Cpgi3111	CpG island 3111	546 bp proximal
Rr449891	regulatory region 449891	349 bp proximal
Rr449892	regulatory region 449892	607 bp proximal
Rr449893	regulatory region 449893	1716 bp proximal
Tssr102419	transcription start site region 102419	495 bp upstream
Tssr102420	transcription start site region 102420	520 bp upstream
Tssr102421	transcription start site region 102421	639 bp upstream
Tssr102422	transcription start site region 102422	660 bp upstream
Tssr102423	transcription start site region 102423	670 bp upstream
Tssr102424	transcription start site region 102424	691 bp upstream